Showing posts with label publication. Show all posts
Showing posts with label publication. Show all posts

Thursday, December 6, 2012

Christmas Present #2 OR Red Rock Crabs Rampage

About this time last year, I found out my first paper had been accepted.  Today, I got my second academic Christmas present (hint: it's not a pony, either).

My second, and final, paper from my Master's work was published today in PLoS ONE.  

Woohoo!

That means it's open access, and you can download your very own copy for free!




If you prefer to read my editorialized summary in a more...engaging?...voice, I wrote a little thing for SciPos, UW Biology's Grad Blog. 




Sunday, February 5, 2012

Scientistas of the World Part II OR More Swoonage


This post closes the loop on my promise to write about TWO Scientistas back in October for Ada Lovelace Day.  Get off my back, man, I said I'd do it!  Just kidding, absolutely no one but me is actually concerned about whether or not I write this post.  Except maybe my reader in Russia! Google tells me that I have three views on Rah Rah Radula from Russia.  Probably it's just someone phishing for my credit card number.  They'll probably succeed, but in the meantime maybe learn something about snails and science.  SUCKERS!

Part II: Sharon Strauss and More Swoonage


So, recalling that Ada Lovelace Day is all about inspirational women in STEM fields, I'd like to call your attention to Sharon Strauss.  Now, I have a bad habit of letting my first impressions get the best of me.  I first paper-met her  when I read a review she wrote with colleagues at UC Davis about how native species evolve in response to introduced species.  This is undeniably a cool topic.  To give you just a taste of what's going on out there:

Witness the Black Snake of Australia
Figure 1. Witness! Are you Witnessing? You better be! This handsome devil,
helpfully demonstrating "gape-limited predation" is Pseudechis porphyriacus. 
The Black Snake, Pseudechis porphyriacus, is native to Australia, where it preys on anything smaller than it's head (witness Figure 1), rodents, amphibians, whathaveyou. Wait did I just say amphibians?! In Australia?! That's right, Ima talk about CANE TOADS!!!  For those of you who haven't watched the never. -endingparadeof documentiaries. about this particular poster-child of biological invasions, cane toads were introduced to the continent-cum-island to control cane beetles in 1935. The beetles were accidentally introduced earlier and were problematic for the sugar cane growers.  Folks thought the toads (incidentally Bufo marinus) would solve their problem by eating the cane beetles.  But toads found everything else in Australia much tastier.  So cane toads became super abundant without solving the beetle problem.  In addition to eating everything except what they were supposed to, they also killed native things that ate them, because they secrete a toxin (witness Figure 2) when they are threatened or have road rage (it's ALL about inducible defenses people!).
Figure 2. Oh gross, that white stuff is bufotoxin and this toad is MAD!
So black snakes were eating cane toads and dying from actual food poisoning. But!...BUT! It appears that in approximately 23 generations of snakitude, this species has not only evolved increased resistance to the toxin (Phillips and Shine 2006), they also have evolved smaller heads (Phillips and Shine 2004).  What?! Smaller heads?! That's dumb.  No, smaller heads for a gape-limited predator means you can only eat smaller toads.  Smaller toads make less toxin.  Pinhead snakes eating small toads live to pass on their pinhead genes to the next pinhead generation. EVOLUTION: WIN! 

Anyway, that's way cool, but let's get back to the point

Shocking Upshot: I got really excited about this paper and this concept. Evolution happens so fast, and humans can cause it and we can see the effects!  So, naturally, the author was elevated to Science Goddess status.  But my hasty opinion of Sharon Strauss was formed on one paper only.  Last spring, as part of an ecology seminar, I reviewed and presented on a larger portion of her corpus, and you can imagine how much higher Sharon rocketed in my esteem (hint: way higher) when I realized how broad her research was (hint: pretty, pretty broad, witness the breadth of Figure 3).


Figure 3. Portrait of Sharon Y. Strauss and Friend.
In addition, and I wish ESA hadn't removed or archived this information because it will not have the same impact if I just tell you about it, she wrote this great piece in a profile about the joy of doing science that serves our curiosity.  Or at least that was what I took away from it, so it's entirely possible I'm getting this wrong or projecting.  I'm pretty sure it was something along those lines anyway.  My point is that my perception of Sharon Strauss is that she approaches not only the content of science thoughtfully, as demonstrated by the strength of her research program, but also the act of doing science, the living of a scientific life, of training more scientists.  If that sounds a bit grandiose, that's because it's how that makes me feel.  This is, I think, how we all start out, as scientists and/or students, but something we quickly lose sight of when we get bogged down in logistics of funding and politics of publication.  Or even before then when we have to cram so much knowledge into our heads because we are studying for qualifying exams and trying to remember why we thought this was a good idea in the first place and what do you with all this information that you don't have a context in which to place and didn't I learn all this before and why don't I remember it, it's a good thing I'm learning it now because I'll definitely remember it this time NO I'll never remember it it's too much and I don't even know what they're going to ask me I will definitely embarrass myself horribly in front of my committee and my life will be OVER!


...


OK. So that happened. Sorry.


Like many other passions one turns into a career, you can at least imagine how one might lose track of why one does Science when one is panicked about doing Science very well.  For me, Sharon Strauss was a timely reminder about big-picture thinking.  Inspirational scientists (and all scientists for that matter) aren't only about good science - lots of people do good science.  They are about doing good science with grace and generosity.  

Friday, December 16, 2011

"More than Meets the Claw" OR "How Emily Ruined Christmas with Snails"



Thanks Santa Oyster Drill! This is the best Christmas EVAR!

Every year when I was growing up, I asked for a pony for Christmas.  Never sincerely, of course, because those things are heinously expensive.  But the request was good for a laugh/groan - I am the youngest and my "jokes" were probably humored to excess (this might explain why I have a blog).  My parents were always extremely generous in supporting my horse habit, but since ownership was out of the budget, instead there would be a joke about the pony not fitting in the garage, or some miscommunication and Santa thought I meant a pony ornament, etc.  

This year I got my metaphorical pony - in the form of a
 First.
-Authored.
Publication.  

True, it hasn't been on my list as long as the pony, but I asked Santa SO HARD for a first-authored publication.  Theodore and his brothers ain't got nothin' on my Christmas wishin'.  Now entered into the prestigious Annals of Never Again Cited Research:


That's right! Grason and Miner (2010) just got all up in your face! It's such a big deal it doesn't even fit in the column.  It's still only available on Online First, but will appear in print sometime next year (and get it's very own volume and page numbers! eeeeee!).  

Since many of you won't have access to the full text (open access is not free, my friends), I'll summarize.  In the spirit of the season, and with only minimal apologies for ruining Christmas for everyone, here is:

Emily's Christmas Pageant
The Ecology of Fear: Rudolph Redux

Act I: Two kinds of invasive snails (here depicted as Rudolph) eat fewer oysters (here depicted as a little tree Rudolph was inevitably going to otherwise eat) and hide more when they smell native crabs (here, the Abominable Snowman) eating their brethren.   Merry Christmas to oysters!


Where is Yukon Cornelius when you need him?!


Act II, Scene 1: One kind of snail (only one tested) responds strongly even if it only detects smashed up brethren (no crabs around).



I'm only a little sorry if the graphic nature of this offends you.  Nature doesn't
really worry itself about your childhood memories.  Nature is for real.


Act II, Scene 2: But that snail also does respond to the native crab even when no bretheren are involved.




INTERMISSION
(to soothe the crying kiddos)

Act 3: Neither kind of snail responds less when there are more live brethren around to share the risk (see post on the ecology of awesomeness for more detail on why this matters).



Nothing like killing off the most cherished Christmas symbol to put you in the Holiday spirit!  I'm evidently feeling punchy today. 

Speaking of punchy, I wanted to title this paper, "More than Meets the Claw: Behavioral plasticity... blah blah blah".  I thought this was  a clever reference to the fact that without actually eating the snails, crabs can change the ecological dynamics in the system (more oysters, yay!), and to a popular 80's cartoon.  Academia has a different take on clever, so I went with a more direct title (*cough, cough, SELLOUT!*).  

In all seriousness, I am much indebted to my former advisor and co-author, Ben Miner for telling me to stick to my guns as long as was reasonable and then maybe figure out how to be flexible and take recommendations from the reviewers.  I joke when I say this publication came from Santa, I made this happen with the quixotic tenacity peculiar to junior graduate students.  This was not an easy process, and took about 18 months from the time of first submission.  I would have given up waaaay sooner if not for Ben, or maybe just submitted it to Veliger.  


First: Oecologia, then: THE WORLD!


Wishing y'all happy holidaysmas2011!